All resources, (unless noted) can be given to and transfered from Estates. Feeding you population multiple food types will increase popularity!
Meat is caught by the Hunter's Post, and his dog delivers it to the Granary.
Apples are grown in Apple Farms and the farmers then take them to the Granary.
Cheese is taken to the Granary by the Dairy Farmer.
Bread is made by the Wheat Farm, Mill and Bakery and stored in the Granary.